Ask your self do you have proper hardware – Audition slow??? FL Insufficient??? There is lot of technical issues, which you have to check. On first place what are you doing? Which sampling rate you are using? What is the length of samples? Size and speed of RAM? Sound card and type of driver? CPU and chip set? If you want of as to help how to reach Alaska, on first place you should say to as where you are.
By the way, the best what I so about aligning is Sonar 8 (8.5).
Q9650, ASUS P5Q SE Plus,8Gb RAM, M-Audio FireWire Solo, 3 x Delta 1010, Eurodesk SL3242FX, Luna II mice, TRUTH B2031A etc, Hamer Sunburst A\T guitar, Keystation 61ES